Single-cell visualization application
Pegasusio is a Python package for reading / writing single-cell genomics data
Command line utilities for running workflows
Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells
demuxEM is the demultiplexing module of Pegasus
Pytorch implementation of Harmony algorithm on single-cell sequencing data integration
scRNA-Seq analysis tools that scale to millions of cells
Single cell plotting
Forked from MulticoreTSNE (https://github.com/DmitryUlyanov/Multicore-TSNE). Fix a randomness error in tsne.cpp.
Forked from louvain-igraph (https://github.com/vtraag/louvain-igraph). Publish because its PyPI version is out-of-date, whereas our scCloud package depends on this github repo version. Will remove if a new release is published.