12 projects
nhs-dmd
For handling data from the NHS DM+D, along with general prescription parsing
sqlalchemy-config
Handle sqlalchemy connection params in a config file.
cfin-umls-tools
Python tools for interacting with the UMLS
gwas-norm
Normalise GWAS studies and map associations to rsIDs.
variant-mapper
Map genetic variants to rsIDs
ensembl-rest-client
Python access to the Ensembl REST API
multi-join
Join two or more iterators using flexible join conditions
genomic-config
A simple handler for configuration files detailing genomic datasets
cfin-merge-sort
Pure Python external merge sort implementation
cfin-hpc-tools
Some general grid-engine HPC tools, mainly geared for UCL systems but should be generalisable. Note this is not a UCL endorsed package.
cfin-pyaddons
A miscellaneous collection of helper modules and command-line scripts
stdopen
Streamlining file opening from files/stdin/stdout and write via temp
