4 projects
tibanna
Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
pypairix
Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md.
tibanna-ff
Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud.
hic2cool
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as an imported package or a stand-alone Python tool for command line conversion.
