25 projects
rembi-mifa
Models for REMBI and MIFA metadata specifications for FAIR bioimaging data.
pynblast
NBLAST neuron morphology comparison in python (over rust)
backports.strenum
Base class for creating enumerated constants that are also subclasses of str
catmaid-publish
Scripts for publishing data from CATMAID
extreqs
Parse python requirements.txt files into setuptools extras
ncollpyde
A python wrapper around a subset of the ncollide rust library
retractions
Check DOIs for retractions
jfibsem-dat
molesq
Implementation of moving least squares for ND point and image deformation
flexfs
Python tools for querying Flexible File Structure
f-it
citepy
Automatically create citations for packages
catmaid-catnap
Experiments working with CATMAID and napari
hcl
Interactive CLI for exploring HDF5 files
catpy
Python client for the CATMAID API
fran
Annotate frames of a multiTIFF video
coordinates
Convenience class for doing maths with explicit coordinates
pyenv-mkenv
Simple script to help create and use pyenv virtualenvs
h5py-like
Abstract base classes for making h5py-like objects.
yarqueue
Yet Another python queue backed by redis; but modern and compliant
smalldataviewer
Command-line tool and python library for visualising small 3D datasets
mpl-colors
Enums representing named colors available in matplotlib
pipe2codeblock
Pipe text into a code block in a markdown file.
tempcase
Utilities for handling python test cases with temporary directories and files, for people using `pyunit`/`unittest`.
toolup
Convenience package for installing python-based development tools
