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Yiming Yang

Username    dragonseyes
Date joined   Joined

13 projects

cirrocumulus

Last released on

Single-cell visualization tool

pegasuspy

Last released on

Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells

pegasusio

Last released on

Pegasusio is a Python package for reading / writing single-cell genomics data

harmony-pytorch

Last released on

Pytorch implementation of Harmony algorithm on single-cell sequencing data integration

forceatlas2-python

Last released on

scRNA-Seq analysis tools that scale to millions of cells

demuxEM

Last released on

demuxEM is the demultiplexing module of Pegasus

altocumulus

Last released on

Command line utilities for running workflows

sccloud

Last released on

scRNA-Seq analysis tools that scale to millions of cells

MulticoreTSNE-modified

Last released on

Forked from MulticoreTSNE (https://github.com/DmitryUlyanov/Multicore-TSNE). Fix a randomness error in tsne.cpp.

anndata-modified

Last released on

Forked package from anndata v0.6.4, with a bug fix on reading string features. This fix was done following anndata official repository, but was not added to v0.6.4.

louvain-github

Last released on

Forked from louvain-igraph (https://github.com/vtraag/louvain-igraph). Publish because its PyPI version is out-of-date, whereas our scCloud package depends on this github repo version. Will remove if a new release is published.

umap-learn-modified

Last released on

Forked from umap-learn (https://github.com/lmcinnes/umap). Change API so that UMAP accepts precomputed KNN input, rather than always calculating by itself. Remove numba.njit parallel option to avoid delay in the cloud.

fisher-modified

Last released on

Forked from fisher (https://github.com/brentp/fishers_exact_test). Recompile it with Cython 0.29.4 to be compatible with Python 3.7.

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