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Yiming Yang

Username    dragonseyes
Date joined   Joined

15 projects

cirrocumulus

Last released

Bring your single-cell data to life

altocumulus

Last released

Command line utilities for running workflows

pegasusio

Last released

Pegasusio is a Python package for reading / writing single-cell genomics data

stratocumulus

Last released

Stratocumulus is the backend component of Cumulus.

pegasuspy

Last released

Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells

demuxEM

Last released

demuxEM is the demultiplexing module of Pegasus

harmony-pytorch

Last released

Pytorch implementation of Harmony algorithm on single-cell sequencing data integration

nmf-torch

Last released

A PyTorch implementation on Non-negative Matrix Factorization.

forceatlas2-python

Last released

scRNA-Seq analysis tools that scale to millions of cells

sccloud

Last released

scRNA-Seq analysis tools that scale to millions of cells

MulticoreTSNE-modified

Last released

Forked from MulticoreTSNE (https://github.com/DmitryUlyanov/Multicore-TSNE). Fix a randomness error in tsne.cpp.

anndata-modified

Last released

Forked package from anndata v0.6.4, with a bug fix on reading string features. This fix was done following anndata official repository, but was not added to v0.6.4.

louvain-github

Last released

Forked from louvain-igraph (https://github.com/vtraag/louvain-igraph). Publish because its PyPI version is out-of-date, whereas our scCloud package depends on this github repo version. Will remove if a new release is published.

umap-learn-modified

Last released

Forked from umap-learn (https://github.com/lmcinnes/umap). Change API so that UMAP accepts precomputed KNN input, rather than always calculating by itself. Remove numba.njit parallel option to avoid delay in the cloud.

fisher-modified

Last released

Forked from fisher (https://github.com/brentp/fishers_exact_test). Recompile it with Cython 0.29.4 to be compatible with Python 3.7.

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