Skip to main content
Avatar for Yiming Yang from gravatar.com

Yiming Yang

Username    dragonseyes
Date joined   Joined

15 projects

cirrocumulus

Last released

Bring your single-cell data to life

pegasuspy

Last released

Pegasus is a Python package for analyzing sc/snRNA-seq data of millions of cells

pegasusio

Last released

Pegasusio is a Python package for reading / writing single-cell genomics data

stratocumulus

Last released

File backend component of Cumulus

demuxEM

Last released

demuxEM is the demultiplexing module of Pegasus

harmony-pytorch

Last released

Pytorch implementation of Harmony algorithm on single-cell sequencing data integration

altocumulus

Last released

Command line utilities for workflows on Terra or Cromwell

nmf-torch

Last released

A PyTorch implementation on Non-negative Matrix Factorization.

forceatlas2-python

Last released

scRNA-Seq analysis tools that scale to millions of cells

sccloud

Last released

scRNA-Seq analysis tools that scale to millions of cells

MulticoreTSNE-modified

Last released

Forked from MulticoreTSNE (https://github.com/DmitryUlyanov/Multicore-TSNE). Fix a randomness error in tsne.cpp.

anndata-modified

Last released

Forked package from anndata v0.6.4, with a bug fix on reading string features. This fix was done following anndata official repository, but was not added to v0.6.4.

louvain-github

Last released

Forked from louvain-igraph (https://github.com/vtraag/louvain-igraph). Publish because its PyPI version is out-of-date, whereas our scCloud package depends on this github repo version. Will remove if a new release is published.

umap-learn-modified

Last released

Forked from umap-learn (https://github.com/lmcinnes/umap). Change API so that UMAP accepts precomputed KNN input, rather than always calculating by itself. Remove numba.njit parallel option to avoid delay in the cloud.

fisher-modified

Last released

Forked from fisher (https://github.com/brentp/fishers_exact_test). Recompile it with Cython 0.29.4 to be compatible with Python 3.7.

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page