80 projects
fw-hpc-client
The HPC Client is a self-service solution that allows Flywheel jobs and gears to run on a High Performance Computing environment. Use on-premise hardware that's already available for highly-concurrent scientific workloads!
fw-file
Unified data-file interface
fw-meta
Flywheel metadata extraction.
fw-pyqt-management
A cross-platform PyQt Library to represent the Flywheel hierarchy with specific tree nodes.
flywheel-sdk
Flywheel SDK
fw-file-rs
Read, parse and de-identify DICOM files
fw-storage
Unified storage interface.
flywheel-bids
Flywheel BIDS Client
fw-dataset
A library for working with Flywheel datasets
fw-gear-hierarchy-curator
Custom hierarchy curation gear
fw-gear
Flywheel Gear Development Toolkit
fw-curation
Flywheel Curation tools
fw-gear-fast-surfer
Wrapper for Fast Surfer
fw-gear-file-metadata-importer
Extract metadata of input file to Flywheel.
fw-gear-dcm-to-mips
Convert dicom file to MIPS format
fw-gear-form-and-annotations-exporter
Export Form Responses and/or Annotations to CSV file(s).
fw-gear-form-importer
Extract data from input form to Flywheel.
fw-gear-deid-export
Utilities for de-identification/anonymization of files within Flywheel
fw_gear_petsurfer_mc
None
fw-logging
Logging helper library.
fw-utils
Common Flywheel helper utilities.
flywheel-migration
Flywheel Migration Toolkit
fw-gear-monai-transforms
Apply the MONAI tranforms as specified by the user input script and save output in the destination container
fw-http-client
Prod-ready HTTP client with timeout and retries
fw-gear-dicom-fixer
This gear reports on the Dicom files data elements and optionally fixes or enhances the problematic ones, generating a new archive.
fw-gear-dicom-splitter
DICOM splitter based on unique tags, or localizers
fw-client
Flywheel HTTP API client.
fw-gear-dcm2niix
A Flywheel Gear for implementing Chris Rorden's dcm2niix for converting DICOM (or PAR/REC) to NIfTI (or NRRD).
fw-gear-nifti-to-mips
Convert nifti to MIPS.
fw-gear-deid-inplace
Deidentifies a file in place.
fw-gear-dicom-qc
Validate dicom archive on a set of hardcoded and user-specified rules
fw-gear-file-classifier
Generic File Classifier
flywheel-gear-toolkit
Tooling for developing Flywheel gears
fw-gear-dicom-send
Send DICOMs from Flywheel to a remote DICOM server using pynetdicom
fw-classification
Flywheel classification toolkit.
fw-gear-image-pii-redactor
None
fw-image-pii-detector
{{description}}
fw-curate-bids
Use this gear to initialize BIDS filenames and attributes on all files within a given project.
flywheel-transfer-smartcopy
smart copy utility
flywheel-transfer-utils
Common utilities for flywheel operations
fw-gear-project-settings
For a given project, clone the permissions and gear rules to a new project, or export the settings for import to another project.
fw-gear-qc-reporter
Gear to report on metadata qc results
fw-gear-rtp2-pipeline
Tract and metrics generation for Diffusion MRI
fw-gear-rtp2-preproc
RTP2 Pre-processing Diffusion MRI
fw-presidio-image-redactor
{{description}}
fw-gear-validated-file-metadata-importer
Extract metadata of input file to Flywheel.
fw-http-testserver
HTTP test server for mocking services
fw-gear-file-esign
file-esign is a gear for e-signing plaintext and pdf files. It uses MFA to authenticate the user and incorporates identity and timestamp into an e-signature of the file.
fw-gear-mriqc
Image quality metrics for quality assessment of MRI
fw-gear-freesurfer-recon-all
Gear that runs Freesurfer
fw-gear-nnunetv1
Run inference by the nnUnet v1 model.
fw-gear-rtstruct-to-nifti
Flywheel Gear for converting RTStruct ROIs to NIfTI
fw-gear-img-to-dicom
Encapsulates multiple two-dimensional image formats (e.g. png, jpg, gif, bmp) in a dicom archive.
fw-gear-mask-exporter
None
fw-gear-dicom-seg-to-ohif
Flywheel Gear for converting DICOM SEG ROIs to OHIF JSON
fw-gear-freesurferator
None
fw-gear-cow-says
A gear that makes animal speak
fw-gear-relabel-container
Change container labels in preparation for curate-bids gear
fw-gear-fhir-bundle-exporter
Export FHIR Bundles as json files
flywheel-cli
Flywheel Command Line Interface
fw-gear-splitter
DICOM splitter based on unique tags, or localizers
flywheel-common
Collection of toolkits to be used across the Flywheel platform
flywheel-gears
Flywheel Gear tools
migration-toolkit
Flywheel Migration Toolkit
fw-gdrive
Flyweheel Google Drive Integration Tools
fw-gear-oct-qa
OCT Quality Assessment
fw-core-client
Flywheel Core HTTP API client
fw-gear-ants-dbm-cross-sectional
fw-gear-ants-dbm-longitudinal
Run ANTs antsLongitudinalCorticalThickness.sh script
fw-test-env
Flywheel integration test environment through a Pytest plugin.
fw-gear-ants-atlas-registration
fw-http-metrics
FastAPI middleware for collecting and exposing Prometheus metrics.
fw-gear-ants-buildtemplateparallel
Run ANTs buildtemplateparallel.sh script and generate templates.
flywheel-gear-cli
CLI for gear operations
fw-gear-utils
Flywheel common gear utilities
fw-gear-testing
Testing suite for Flywheel Gears
fw-gear-fsl-fslhd
Gear parsing metadata from nifti file using FSL's fslhd function.
flywheel-metadata-toolkit
Flywheel Metadata Toolkit
flywheel-healthcare-api
Google Cloud Healthcare API client library
flylogging
Logging module to allow for live reloading of logging configuration
