9 projects
aMGSIM
aMGSIM: simulate ancient metagenomes for multiple synthetic communities
get-ancient-vf
A simple tool to map ancient reads against VFDB.
bam-filter
A simple tool to filter references from a BAM file using different filter types
dmg-reads
A simple tool to extract damaged reads from BAM files
x-filter
A simple tool to filter BLASTx m8 files using the FAMLI algorithm
get-biomes
A simple tool to get biomes related data from MGnify and ENA
derep-genomes
A simple genome de-replication tool with fastANI
refine-contigs
A simple tool to identify and clean misassemblies for ancient metagenomics
collapse-gtdb-tree
A simple tool to collapse the reference GTDB tree at a scpecific rank