24 projects
cg
Clinical Genomics command center
cg-hermes
Convert information between pipelines and CG
scout-browser
Clinical DNA variant visualizer and browser
trailblazer
Keep track of and manage analyses
genmod
Annotate genetic inheritance models in Variant Call Format (VCF) files
chanjo2
Next generation coverage analysis
schug
Keep track of genes, transcripts and exons from different sources
chanjo-report
Automatically render coverage reports from Chanjo ouput
housekeeper
File data orchestrator
patientmatcher
patientMatcher - a Python and MongoDB-based MatchMaker Exchange server
loqusdb
A simple observation count database
cg-fluffy
NIPT analysis pipeline
crunchy
Compress fastq files with spring and check the integrity
cg-maven
Store quality control metrics for cases in Clinical Genomics
mutacc
The mutation accumulation database
cgmodels
mongo-adapter
A python interface to handle connection to a mongod instance
demux
Application for demultiplexing sequence data
varg
Benchmark vcf-files against a truth-set of positive controls
shipping
Cli utility for deploying packages
genotype
genotype provides an automated pipipeline for comparinggenotypes from different assays.
cgstats
Models and access to cgstats
ped_parser
A ped file parser.
variant_integrity
Tool to check mendelian errors and estimate if father is father
