19 projects
cg-fluffy
NIPT analysis pipeline
cg-hermes
Convert information between pipelines and CG
scout-browser
Clinical DNA variant visualizer and browser
genmod
Annotate genetic inheritance models in Variant Call Format (VCF) files
schug
Keep track of genes, transcripts and exons from different sources
chanjo-report
Automatically render coverage reports from Chanjo ouput
patientmatcher
patientMatcher - a Python and MongoDB-based MatchMaker Exchange server
loqusdb
A simple observation count database
crunchy
Compress fastq files with spring and check the integrity
cg-maven
Store quality control metrics for cases in Clinical Genomics
mutacc
The mutation accumulation database
mongo-adapter
A python interface to handle connection to a mongod instance
demux
Application for demultiplexing sequence data
varg
Benchmark vcf-files against a truth-set of positive controls
shipping
Cli utility for deploying packages
genotype
genotype provides an automated pipipeline for comparinggenotypes from different assays.
cgstats
Models and access to cgstats
ped_parser
A ped file parser.
variant_integrity
Tool to check mendelian errors and estimate if father is father
