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genotype provides an automated pipipeline for comparinggenotypes from different assays.

Project description

Genotype

Build Status - Github Coverage Status GitHub issues-closed Average time to resolve an issue Percentage of issues still open CodeFactor Code style: black Manage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.

Install

$ conda install -c bioconda pysam pyyaml sqlalchemy flask
$ pip install genotype

Help?

Please check out the documentation

Project details


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