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Clinical Genomics

Username    clingen
Date joined   Joined

23 projects

cg

Last released

Clinical Genomics command center

cg-hermes

Last released

Convert information between pipelines and CG

trailblazer

Last released

Trailblazer is a tool to manage and track state of analyses

loqusdb

Last released

Store observations of vcf variants in a mongodb

schug

Last released

Keep track of genes, transcripts and exons from different sources

scout-browser

Last released

Clinical DNA variant visualizer and browser.

chanjo-report

Last released

Automatically render coverage reports from Chanjo ouput

chanjo

Last released

Coverage analysis tool for clinical sequencing

housekeeper

Last released

Housekeeper takes care of files

stranger

Last released

Annotate VCF files with str variants

genmod

Last released

Annotate genetic inheritance models in variant files

mutacc

Last released

The mutation accumulation database

patientMatcher

Last released

A python and MongoDB-based Matchmaker Exchange server

cgmodels

Last released

crunchy

Last released

Compress fastq with spring

cg-fluffy

Last released

NIPT analysis pipeline

mongo-adapter

Last released

A python interface to handle connection to a mongod instance

demux

Last released

Application for demultiplexing sequence data

varg

Last released

Benchmark vcf-files against a truth-set of positive controls

shipping

Last released

Cli utility for deploying packages

genotype

Last released

genotype provides an automated pipipeline for comparinggenotypes from different assays.

cgstats

Last released

Models and access to cgstats

variant_integrity

Last released

Tool to check mendelian errors and estimate if father is father

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