23 projects
cg
Clinical Genomics command center
cg-hermes
Convert information between pipelines and CG
scout-browser
Clinical DNA variant visualizer and browser.
trailblazer
Trailblazer is a tool to manage and track state of analyses
loqusdb
Store observations of vcf variants in a mongodb
housekeeper
Housekeeper takes care of files
schug
Keep track of genes, transcripts and exons from different sources
genmod
Annotate genetic inheritance models in variant files
mutacc
The mutation accumulation database
patientMatcher
A python and MongoDB-based Matchmaker Exchange server
chanjo-report
Automatically render coverage reports from Chanjo ouput
cgmodels
crunchy
Compress fastq with spring
cg-fluffy
NIPT analysis pipeline
stranger
Annotate VCF files with str variants
mongo-adapter
A python interface to handle connection to a mongod instance
chanjo
Coverage analysis tool for clinical sequencing
demux
Application for demultiplexing sequence data
varg
Benchmark vcf-files against a truth-set of positive controls
shipping
Cli utility for deploying packages
genotype
genotype provides an automated pipipeline for comparinggenotypes from different assays.
cgstats
Models and access to cgstats
variant_integrity
Tool to check mendelian errors and estimate if father is father
