24 projects
netcoloc
Analyze network colocalization of gene sets
cellmaps-coembedding
A tool to generate coembeddings from IF image embeddings and PPI network embeddings
cellmaps-generate-hierarchy
A tool to generate hierarchies from protein to protein interaction networks
cellmaps-vnn
The Cell Maps VNN Tool enables creation, training, and usage of an interpretable neural network-based models that predict cell response to a drug.
ndex2
Nice CX Python includes a client and a data model.
cellmaps-pipeline
Runs full Cell Maps pipeline
cellmaps-utils
Contains utilities needed by Cell Maps tools
cellmaps-ppi-embedding
A tool to generate embeddings from networks
cellmaps-image-embedding
A tool to generate embeddings from HPA IF images
cellmaps-hierarchyeval
A tool to evaluate hierarchies with known resources
cellmaps-imagedownloader
A tool to download specified image data from the Human Protein Atlas website using CSV file or to copy data from CM4AI dataset
cellmaps-ppidownloader
A tool to download AP-MS data for Cell Maps pipeline
cdapsutil
Python utilities for CDAPS
ndexstringloader
Loads STRING data into NDEx
ndexutil
Unsupported NDEx utilities
ndexsignorloader
Loads SIGNOR data into NDEx
ndexncipidloader
Loads NCI-PID data into NDEx
naga-gwas-rest
REST service for Network Assisted Genomic Analysis (NAGA)
ndexbiogridloader
Loads BioGRID data into NDEx
ndexgenehancerloader
Loads GeneHancer database to NDEx
naga-gwas
Network Assisted Genomic Association
ndex-webapp-python-exporters
Command line exporters written in Python used by the NDex REST service
ndex2-dev
Nice CX Python includes a client and a data model.
ndex
NDEx Python includes a client and a data model.
