13 projects
prot-struct-viz
Render a protein structure as a self-contained static HTML Mol* view, colored and labeled per residue from a CSV.
tree-annotated-plot
Annotate the axis of an Altair / Vega-Lite plot with a phylogenetic tree.
neutcurve
Plot and fit neutralization curves.
phydms
Phylogenetic analyses informed by deep mutational scanning data.
dmslogo
Logo plots of deep mutational scanning (DMS) data
polyclonal
Model mutational escape from polyclonal antibodies.
alignparse
Align sequences and then parse features.
binarymap
Binary representation of protein or nucleotide sequences.
dms-variants
Analyze deep mutational scanning of barcoded variants.
dms-tools2
Deep mutational scanning (DMS) analysis tools.
pdb-prot-align
Align proteins to PDB chains
dms-struct
Visualize deep mutational scanning on protein structure.
dms_tools
Deep mutational scanning (DMS) analysis tools.
