6 projects
mgnify-pipelines-toolkit
Collection of scripts and tools for MGnify pipelines
kegg-pathways-completeness
The tool counts completeness of each KEGG pathway for protein sequences.
mi-pimento
A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding amplicon sequence variants
assembly-uploader
Python scripts to upload primary metagenome and metatranscriptome assemblies to ENA on a per-study basis. This script generates xmls to register a new study and create manifests necessary for submission with webin-cli.
eukcc
Check eukaryotic genomes or MAGs for completeness and contamination
pygmes
Run GeneMark-ES using pretrained models
