Run GeneMark-ES using pretrained models
Project description
pygmes is a wraper for GeneMark-ES
This project aims at making GeneMark-ES more usable. By default GeneMark-ES has some problems with fragmented and incomplete genomes.
For metagenomic analysis this is an issue, thus I developed pygmes.
Status
Currently this project is very much WIP, so do expect problems and incomplete documentation.
It is just on pip already as it is a suggested package for EukCC (https://github.com/Finn-Lab/EukCC/)
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file pygmes-0.1.7.tar.gz.
File metadata
- Download URL: pygmes-0.1.7.tar.gz
- Upload date:
- Size: 1.4 MB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.45.0 CPython/3.7.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
d9631609649d8ee4bea477b815f128aac690171d8c7ff4fcf4f1eaeb74002267
|
|
| MD5 |
ce668cc1ee0cd267fe8747d0bc3e19f9
|
|
| BLAKE2b-256 |
d87d85a67aa230b782f72940c4a60d5bddcdc0bc91c5615024918981abc25118
|
File details
Details for the file pygmes-0.1.7-py3-none-any.whl.
File metadata
- Download URL: pygmes-0.1.7-py3-none-any.whl
- Upload date:
- Size: 1.4 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.1.1 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.0.1 requests-toolbelt/0.9.1 tqdm/4.45.0 CPython/3.7.3
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
246a80fe42d6c9d7b97f65daceeb6e8aeb8ba1978347dedc19d6773e82952f49
|
|
| MD5 |
901fdbb854c783593dfb6addc2c8c666
|
|
| BLAKE2b-256 |
c12947057b11da700d92b52c36467188eb683b82041225c5bad16998461b5bc2
|
