7 projects
mgnify-pipelines-toolkit
Collection of scripts and tools for MGnify pipelines
assembly-uploader
Python scripts to upload primary metagenome and metatranscriptome assemblies to ENA on a per-study basis. This script generates xmls to register a new study and create manifests necessary for submission with webin-cli.
eukcc
Check eukaryotic genomes or MAGs for completeness and contamination
fetch-tool
Utility to fetch public and private RAW read and assembly files from the ENA
mg-toolkit
Metagenomics toolkit.
pygmes
Run GeneMark-ES using pretrained models
