7 projects
annzarro
Read-only browser viewer for AnnData (zarr, h5ad) built around cell-by-cell and gene-by-gene matrices
kompot
Differential abundance and gene expression analysis using Mahalanobis distance with JAX backend
palantir
Palantir for modeling continuous cell state and cell fate choices in single cell data
spatial-smooth
Composable spatial and cell-state smoothing of gene signatures for single-cell and spatial transcriptomics
mellon
Non-parametric density estimator.
kdpeak
A tool to identify genomic peaks based on kernel density estimation.
sep241
Deconvolve CUT&Tag 2for1 data.
