21 projects
cellier
A workshop for rendering cellular models.
napari
n-dimensional array viewer in Python
spatialdata-plot
Static plotting for spatial data.
spatialdata-io
SpatialData IO for common techs
spatialdata
Spatial data format.
morphosamplers
A library for sampling image data along morphological objects such as splines and surfaces.
morphospaces
a library for creating and exploring morphospaces.
napari-svg
A plugin for writing svg files with napari
napari-console
A plugin that adds a console to napari
napari-threedee
A suite of useful tools based on 3D interactivity in napari
surforama
a tool for using surfaces to explore volumetric data in napari
cellcanvas
A tool for painting in cellular architecture
morphometrics
A plugin for quantifying shape and neighborhoods from images.
morphometrics-engine
A morphometrics measurement engine.
ovary-analysis
ovarian follicle analysis pipeline
spatial-analysis-toolkit
tools for interacting with spatial data
napari-plugin-engine
napari plugin engine, fork of pluggy
napari-properties-viewer
A viewer for napari layer properties
spatial-utils
a collection of utilities for spatial-omics analysis
calciumcurator
a GUI for curating and exploring calcium imaging data
jobcreator
CLI for setting up and running slurm jobs
