morphometrics
A plugin for quantifying shape and neighborhoods from images.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Installation
conda environment file
You can install morphometrics via our conda environment file. To do so, first install anaconda or miniconda on
your computer. Then, download the environment.yml file (right click the link and "Save as..."). In your terminal,
navigate to the directory you downloaded the environment.yml file to:
cd <path/to/downloaded/environment.yml>
Then create the morphometrics environment using
conda env create -f environment.yml
Once the environment has been created, you can activate it and use morphometrics as described below.
conda activate morphometrics
If you are on Mac OS or Linux install the following:
Mac:
conda install -c conda-forge ocl_icd_wrapper_apple
Linux:
conda install -c conda-forge ocl-icd-system
Development installation
To install latest development version :
pip install git+https://github.com/kevinyamauchi/morphometrics.git
Example applications
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napari plugin for measuring properties of segmented objects (regionprops) |
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Contributing
Contributions are very welcome. Tests can be run with tox, please ensure the coverage at least stays the same before you submit a pull request.
License
Distributed under the terms of the BSD-3 license, "morphometrics" is free and open source software
Issues
If you encounter any problems, please file an issue along with a detailed description.
1 maintainer
Metadata
1 maintainer
Release files for morphometrics 0.0.8
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| morphometrics-0.0.8.tar.gz | 23.8 MB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| morphometrics-0.0.8-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 23.8 MB
Release files / morphometrics-0.0.8.tar.gz
| Download URL | morphometrics-0.0.8.tar.gz |
|---|---|
| Size | 23.8 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
22dbf23aa9f2fee489bcec3d39ca6c462b809d4dd847227fbc2b5fb7770a2188
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BLAKE2b-256 checksum How to use checksums |
1d75d3147298f4efbf75d1b8554a25302b9e5f7c0f5df2fc8ec2b9b6bc091c65
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.1
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Release files / morphometrics-0.0.8-py3-none-any.whl
| Download URL | morphometrics-0.0.8-py3-none-any.whl |
|---|---|
| Size | 78.2 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
68f4a1302fa3f9144b5f4a51dd1de90635481bfa71c73be3e4cdc94a1dccf89f
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BLAKE2b-256 checksum How to use checksums |
9aa7bbb4f3a138df518e4272abc12c04756461cbddd529640d1539bda28e94ad
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/4.0.2 CPython/3.11.1
|
Security for morphometrics 0.0.8
Provenance
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No provenance found
None of the files in this release were uploaded with provenance metadata.
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