6 projects
pseudotimede-py
Python implementation of the PseudotimeDE algorithm for differential expression analysis on estimated pseudotimes. Uses scDesigner for simulation model estimation.
scdiagnostics
None
scdesigner
Interactive simulation for rigorous and transparent multi-omics analysis.
clusterde-py
Minimal implementation of the ClusterDE Algorithm for marker gene analysis vs. a synthetic null
scdesigner-backup
Python wrapper exposing scDesign3 through a scDesigner-compatible interface.
distortions
Interactive visualization of distortion in nonlinear embeddings.
