21 projects
sbmlode
sbmlode writes the ordinary differential equations of SBML models as python, julia and R code and as LaTeX, typst and markdown documents.
sbml4humans
Interactive, human readable reports of SBML models, in the browser and from python.
sbmlutils
sbmlutils are python utilities for working with SBML.
pymetadata
pymetadata are python utilities for working with metadata.
pkpdbib
pkpdbib are python utilities for PK/PD literature and bibliography management.
libsbgnpy
libsbgnpy are python utilities for working with SBGN.
sbml2cellml
sbml2cellml converts between SBML and CellML.
pkpdutils
pkpdutils are python utilities for the pharmacokinetic and pharmacodynamic analysis of timecourses and parameters.
pkdb
Prepare, validate, query, and upload PK-DB studies
pkdb-data
pkdb_data are python utilities for working with PK-DB.
sbmlsim
sbmlsim are python utilities for the simulation of SBML models.
tellurium
Tellurium: An biological modeling environment for Python
visfem
VisFEM: Web visualization of FEM models
porous-media
Python utilities for SBML.
fbc-curation
FBC reference files for SBML model curation.
pkdb-analysis
Python utilities for PK-DB.
protein-distribution
pyton package for accessing protein distribution data.
limax
limax are python utilities for working with LiMAx.
petabunit
petabunit are python utilities for working with units with PEtab.
combine-notebooks
combine_notebooks - COMBINE jupyter notebooks in python.
brendapy
Parsing BRENDA information.
