13 projects
QSIPrep
QSIPrep builds workflows for preprocessing and reconstructing q-space images
qsiplan
Plan and explain QSIPrep's diffusion-MRI preprocessing from BIDS metadata
unpile
Susceptibility distortion correction for EPI: GRE fieldmap refinement and fieldmap-less correction against an anatomical reference
trxscan
Diffusion-MRI simulator (TRXScan): complex 4D DWI with EPI artifacts, motion and ground truth from a tractogram phantom
cs-dmri
Diffusion MRI quality control, SHORE compressed-sensing fits, RESTORE tensors and SS3T-CSD, in Rust
odx
Python bindings for the ODX format — TRX-style mmap container for ODFs, peaks, and SH coefficients
cubids
Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
freesurfer-post
Post-processing tools for FreeSurfer outputs
modelarrayio
ModelArrayIO: convert fixel, voxel, and greyordinate neuroimaging data to/from HDF5 for the ModelArray R package
babs
BABS: BIDS App BootStrap
qsiprep-container
qsiprep is a non-DTI diffusion-weighted image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
aslprep
ASLPREP is a robust and easy-to-use pipeline for preprocessing of diverse ASL data.
xcpengine-container
xcpEngine is a tool for denoising fMRI data and calulating
