QSIPlan

Plan and explain qsiprep's diffusion-MRI preprocessing from BIDS metadata and configuration flags.

qsiplan groups a subject's DWI scans the way qsiprep will (distortion groups, fieldmap estimations, correction units, outputs), validates the data and curation (missing phase-encoding metadata, IntendedFor conflicts, shim walls, b-value mismatches...), compiles the execution plan for any combination of head-motion- and susceptibility-correction methods, and renders it all as text or as a self-contained interactive HTML page:

qsiplan /path/to/bids --html grouping.html

Development

Set up the pinned lint/format hooks once — they run automatically on every commit and use the exact tool versions CI does, so nothing passes locally and then fails in CI:

pip install -e '.[tests,dev]'
pre-commit install

To lint the whole tree the way CI does (or before a first commit):

pre-commit run --all-files

The pinned versions live in a single place, .pre-commit-config.yaml; bump a rev there and both local hooks and CI follow.