IsoForge is a hypergraph-based tool for long-read RNA-seq: it keeps every read whole to discover isoforms with their start and poly(A) sites, count them, and call gene fusions, all in one run.
Isoform, read, poly(A), RNA modification and gene fusion figures from IsoForge long-read RNA-seq results
Companion tool for IsoForge: replicate-aware statistics for poly(A) tail length, alternative polyadenylation and transcription start sites
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