8 projects
mirpy-lib
ML-oriented embeddings for immune receptor repertoires (TCR/BCR)
tcren
TCR-pMHC ranking with contact potentials, interface confidence and contact enrichment
vdjtools
TCR/BCR repertoire analysis — Pgen/generation/inference, diversity, overlap, biomarkers (Python + C++)
arda-mapper
Antigen Receptor Domain Annotation — fast TCR/BCR FR/CDR region annotation
seqtree
Fast fuzzy search over biological sequences (C++ core, Python bindings)
vdjmatch
Fast, control-calibrated annotation of T-cell receptor antigen specificity
mhcmatch
Peptide-MHC presentation, cross-reactivity and motif tools on the seqtree substrate
migec
UMI barcode extraction, correction and consensus assembly for barcoded sequencing
