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12 Projects

abi2fastq

Last released on Sep 19, 2017

abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ Edit

anchor-bio

Last released on Jun 29, 2017

Anchor is a python package to estimate modality of splicing, percent methylated, any data that is normalized between 0 and 1

bonvoyage

Last released on Jul 14, 2016

Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.

flotilla

Last released on Aug 8, 2016

Embark on a journey of single-cell data exploration.

hermione

Last released on Sep 5, 2017

Joyplots and more for single cells

lonnberg_svensson2017

Last released on Jul 2, 2017

Expression data for Lönnberg + Svensson et al, "Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria," Science Immunology (2017)

macosko2015

Last released on Jul 1, 2017

Expression data for Macosko et al, "Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets," Cell (2015)

modish

Last released on Jul 13, 2015

Modish is a python package to estimate modality of splicing, percent methylated, any data that is normalized between 0 and 1

outrigger

Last released on Jun 29, 2017

Outrigger detects *de novo* exons and quantifies their percent spliced-in

poshsplice

Last released on Jul 14, 2016

Poshsplice makes your splicing events fancy (posh) by annotating them!

prettyplotlib

Last released on Mar 4, 2014

Painlessly create beautiful default `matplotlib` plots.

sj2psi

Last released on Aug 7, 2015

Convert RNA-STAR SJ.out.tab files to 5-prime and 3-prime "percent spliced in" ("psi") scores.

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