11 projects
abi2fastq
abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ Edit
lonnberg_svensson2017
Expression data for Lönnberg + Svensson et al, "Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria," Science Immunology (2017)
macosko2015
Expression data for Macosko et al, "Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets," Cell (2015)
anchor-bio
Anchor is a python package to estimate modality of splicing, percent methylated, any data that is normalized between 0 and 1
outrigger
Outrigger detects *de novo* exons and quantifies their percent spliced-in
flotilla
Embark on a journey of single-cell data exploration.
poshsplice
Poshsplice makes your splicing events fancy (posh) by annotating them!
bonvoyage
Transform percentage-based units into a 2d space to evaluate changes in distribution with both magnitude and direction.
sj2psi
Convert RNA-STAR SJ.out.tab files to 5-prime and 3-prime "percent spliced in" ("psi") scores.
modish
Modish is a python package to estimate modality of splicing, percent methylated, any data that is normalized between 0 and 1
prettyplotlib
Painlessly create beautiful default `matplotlib` plots.
