Client to the OMA browser, using the REST API.
Suffix array computation with induced sorting algorithm.
PyOPA - optimal pairwise sequence alignments
OMAmer - tree-driven and alignment-free protein assignment to sub-families
A tool to analyse Hierarchical Orthologous Groups (HOGs)
Infering ancestral synteny with hierarchical orthologous groups
Django app to track webtraffic serverside with Matomo API
OMArk - Proteome quality assesment based on OMAmer placements
A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs
Package to work with combined NCBI and GTDB taxonomy
A simple python fuzzyset implementation.
library to interact and build OMA hdf5 files
OMAmo - orthology-based model organism selection
A tool to analyse gene family evolution from orthoxml
Uses OMA's HOGs to predict genes related to QTL.
Siblings is a code base to compute homologs between genomes and make them publicly available through a REST api