16 projects
omadb
Client to the OMA browser, using the REST API.
PySAIS
Suffix array computation with induced sorting algorithm.
pyopa
PyOPA - optimal pairwise sequence alignments
omamer
OMAmer - tree-driven and alignment-free protein assignment to sub-families
pyham
A tool to analyse Hierarchical Orthologous Groups (HOGs)
edgehog
Infering ancestral synteny with hierarchical orthologous groups
django-matomo-api-tracking
Django app to track webtraffic serverside with Matomo API
omark
OMArk - Proteome quality assesment based on OMAmer placements
gethogs
A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs
omataxonomy
Package to work with combined NCBI and GTDB taxonomy
fuzzyset2
A simple python fuzzyset implementation.
pyoma
library to interact and build OMA hdf5 files
omamo
OMAmo - orthology-based model organism selection
familyanalyzer
A tool to analyse gene family evolution from orthoxml
qtlsearch
Uses OMA's HOGs to predict genes related to QTL.
siblings
Siblings is a code base to compute homologs between genomes and make them publicly available through a REST api