18 projects
pyoma
library to interact and build OMA hdf5 files
omamer
OMAmer - tree-driven and alignment-free protein assignment to sub-families
gethogs
A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs
pyham
A tool to analyse Hierarchical Orthologous Groups (HOGs)
fuzzyset2
A simple python fuzzyset implementation.
omadb
Client to the OMA browser, using the REST API.
FastOMA
FastOMA - a package to infer orthology information among proteomes
omark
OMArk - Proteome quality assesment based on OMAmer placements
Rmath4
standalone Rmath library from R
PySAIS
Suffix array computation with induced sorting algorithm.
pyopa
PyOPA - optimal pairwise sequence alignments
edgehog
Infering ancestral synteny with hierarchical orthologous groups
django-matomo-api-tracking
Django app to track webtraffic serverside with Matomo API
omataxonomy
Package to work with combined NCBI and GTDB taxonomy
omamo
OMAmo - orthology-based model organism selection
familyanalyzer
A tool to analyse gene family evolution from orthoxml
qtlsearch
Uses OMA's HOGs to predict genes related to QTL.
siblings
Siblings is a code base to compute homologs between genomes and make them publicly available through a REST api