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19 projects

pyopa

Last released

PyOPA - optimal pairwise sequence alignments

edgehog

Last released

Infering ancestral synteny with hierarchical orthologous groups

omark

Last released

OMArk - Proteome quality assesment based on OMAmer placements

Rmath4

Last released

standalone Rmath library from R

omataxonomy

Last released

Package to work with combined NCBI and GTDB taxonomy

omamer

Last released

OMAmer - tree-driven and alignment-free protein assignment to sub-families

pylabeledrf

Last released

A package to compute the Robinson Fould distance extended to labeled topologies.

FastOMA

Last released

FastOMA - a package to infer orthology information among proteomes

fuzzyset2

Last released

A simple python fuzzyset implementation.

pyoma

Last released

library to interact and build OMA hdf5 files

gethogs

Last released

A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs

pyham

Last released

A tool to analyse Hierarchical Orthologous Groups (HOGs)

omadb

Last released

Client to the OMA browser, using the REST API.

PySAIS

Last released

Suffix array computation with induced sorting algorithm.

django-matomo-api-tracking

Last released

Django app to track webtraffic serverside with Matomo API

omamo

Last released

OMAmo - orthology-based model organism selection

familyanalyzer

Last released

A tool to analyse gene family evolution from orthoxml

qtlsearch

Last released

Uses OMA's HOGs to predict genes related to QTL.

siblings

Last released

Siblings is a code base to compute homologs between genomes and make them publicly available through a REST api

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