omadb

Last released Sep 29, 2023

Client to the OMA browser, using the REST API.

PySAIS

Last released Aug 21, 2023

Suffix array computation with induced sorting algorithm.

pyopa

Last released Jul 28, 2023

PyOPA - optimal pairwise sequence alignments

omamer

Last released Jun 14, 2023

OMAmer - tree-driven and alignment-free protein assignment to sub-families

pyham

Last released Apr 25, 2023

A tool to analyse Hierarchical Orthologous Groups (HOGs)

edgehog

Last released Apr 12, 2023

Infering ancestral synteny with hierarchical orthologous groups

django-matomo-api-tracking

Last released Mar 28, 2023

Django app to track webtraffic serverside with Matomo API

omark

Last released Feb 28, 2023

OMArk - Proteome quality assesment based on OMAmer placements

gethogs

Last released Feb 10, 2023

A tool to infer Hierarchical Orthologous Groups (HOGs) from pairwise orthologs

omataxonomy

Last released Feb 7, 2023

Package to work with combined NCBI and GTDB taxonomy

fuzzyset2

Last released Jan 18, 2023

A simple python fuzzyset implementation.

pyoma

Last released Apr 8, 2022

library to interact and build OMA hdf5 files

omamo

Last released Feb 10, 2022

OMAmo - orthology-based model organism selection

familyanalyzer

Last released Aug 31, 2020

A tool to analyse gene family evolution from orthoxml

qtlsearch

Last released Feb 8, 2019

Uses OMA's HOGs to predict genes related to QTL.

siblings

Last released May 21, 2015

Siblings is a code base to compute homologs between genomes and make them publicly available through a REST api