4 projects
scadnano
Python scripting library for generating designs readable by scadnano.
gpac
gpac stands for "General-Purpose Analog Computer". This package makes it easy to specify ordinary differential equations (ODEs) and plot their solutions. It also contains functions for specifying chemical reaction networks (CRNs) and simulating their behavior.
nuad
nuad stands for "NUcleic Acid Designer". Enables one to specify constraints on a DNA (or RNA) nanostructure made from synthetic DNA/RNA and then attempts to find concrete DNA sequences that satisfy the constraints.
ppsim
A package for simulating population protocols.