7 projects
batss
A Python package with Rust backend for efficient simulation of chemical reaction networks using a batching algorithm.
gpac
A Python package for plotting differential equation trajectories, and dealing with chemical reaction networks.
ppsim
A Python package with Rust backend for efficient simulation of population protocols using the multibatching algorithm of Berenbrink et al.
scadnano
Python scripting library for generating designs readable by scadnano.
ode2tn
A Python package to turn arbitrary polynomial ODEs into a transcriptional network simulating it.
aggie-unterprise
A Python package for extracting and processing grant data from AggieEnterprise spreadsheets.
nuad
nuad stands for "NUcleic Acid Designer". Enables one to specify constraints on a DNA (or RNA) nanostructure made from synthetic DNA/RNA and then attempts to find concrete DNA sequences that satisfy the constraints.
