16 projects
ALOTT-MEDS
An ETL pipeline to extract the ALOTT (Carescape) EMR data into the MEDS format.
omop-schema
A package to read in and convert OMOP data to the right schema.
PICdb-MEDS
An ETL pipeline to extract the Paediatric Intensive Care (PIC) database into the MEDS format.
CDSL-MEDS
An ETL pipeline to extract the COVID Data for Shared Learning dataset into MEDS.
Zigong-MEDS
An ETL pipeline to extract the Zigong Fourth People's Hospital ICU infection database into the MEDS format.
sumeds
Lazy, privacy-aware code occurrence summaries for MEDS datasets
SICdb-MEDS
A template ETL pipeline to extract arbitrary data into the MEDS format.
INSPIRE-MEDS
An ETL pipeline to extract INSPIRE data into the MEDS format.
NWICU-MEDS
An ETL pipeline to extract NWICU data into the MEDS format.
OMOP-MEDS
An ETL to convert OMOP data to the MEDS format.
yaib
🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109
recipies
A modular preprocessing package for Pandas Dataframe
HIRID-MEDS
An ETL pipeline to extract HIRID data into the MEDS format.
MEDS-Inspect
MEDS-Inspect is an interactive data visualization app that supports you in your data exploration.
fhir2meds
Convert HL7 FHIR (v4/v5) Observation resources to MEDS sharded Parquet format.
scikit-optimize-fix
Sequential model-based optimization toolbox. Forked to fix a deprecation for NumPy>1.24.
