4 projects
ancestree-popgen
Ancestral allele annotation via Felsenstein likelihood on ARGs and fixed trees, with or without outgroups.
sfsutils-popgen
SFS parsing with site filtration and annotation, from VCF, Zarr, or tree sequences
fastdfe
Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annotation.
phasegen
Computation and inference on exact solutions of coalescent distributions under diverse demographic scenarios.
