4 projects
sfsutils-popgen
SFS parsing with site filtration and annotation, from VCF, Zarr, or tree sequences
phasegen
Computation and inference on exact solutions of coalescent distributions under diverse demographic scenarios.
fastdfe
Fast and flexible inference of the distribution of fitness effects (DFE).
ancestree-popgen
Ancestral allele annotation via Felsenstein likelihood on ARGs and fixed trees, with or without outgroups.