9 projects
mgnify-pipelines-toolkit
Collection of scripts and tools for MGnify pipelines
kegg-pathways-completeness
The tool counts completeness of each KEGG pathway for protein sequences.
mi-pimento
A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding amplicon sequence variants
prefect-slurm
Prefect worker for running flows on a Slurm HPC cluster
assembly-uploader
Python scripts to upload primary metagenome and metatranscriptome assemblies to ENA on a per-study basis. This script generates xmls to register a new study and create manifests necessary for submission with webin-cli.
ebi-slurpy
Python client for the Slurm REST API
fetch-tool
Utility to fetch public and private RAW read and assembly files from the ENA
mg-toolkit
Metagenomics toolkit.
