9 projects
kaptive
The tool for _in silico_ serotyping
kaptive-web
Web interface for Kaptive, the tool for _in silico_ serotyping
foldgemma
FoldGemma: Protein folding language models
rammappy
A Python interface to rammap, the Rust implementation of minimap2
seroepi
A Python library for bacterial sero-epidemiology
pyfgs
PyO3 bindings and Python interface to FragGeneScanRs, a gene prediction model for short and error-prone reads.
zani
A zero-dependency, ultra-fast Average Nucleotide Identity (ANI) estimator using Zstandard compression distance.
pyeris
Graph-aware contextual annotation of targeted genomic features
kaptive-plot
Plotting library for Kaptive, the tool for in silico serotyping
