In silico serotyping
Project description
Kaptive reports information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies. You can also run a graphical version of Kaptive via this web interface (source code).
For information on how to install, run, interpret and cite Kaptive please visit the Docs.
A step-by-step tutorial for the most recent version is available here (Kaptive v3). The tutorial for the previous version is here.
If you use Kaptive in your research, please cite:
Stanton TD, Hetland MAK, Löhr IH, Holt KE, Wyres KL. Fast and Accurate in silico Antigen Typing with Kaptive 3 [Internet]. bioRxiv; 2025 [cited 2025 Feb 27]. p. 2025.02.05.636613. Available from: https://www.biorxiv.org/content/10.1101/2025.02.05.636613v1
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