In silico serotyping
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Kaptive reports information about surface polysaccharide loci for Klebsiella pneumoniae species complex and Acinetobacter baumannii genome assemblies. You can also run a graphical version of Kaptive via this web interface (source code).
For information on how to install, run, interpret and cite Kaptive please visit the Docs.
A step-by-step tutorial for the most recent version is available here (Kaptive v3). The tutorial for the previous version is here.
If you use Kaptive in your research, please cite:
Stanton TD, Hetland MAK, Löhr IH, Holt KE, Wyres KL. Fast and Accurate in silico Antigen Typing with Kaptive 3. 2025 Microbial Genomics 11(6):001428. Available from: https://doi.org/10.1099/mgen.0.001428
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