7 projects
auto-options-python
Mange command options in python and create QWidgets for them.
tree-ring-analyzer
A package that allows to segment tree rings.
napari-tree-rings
A tool to delineate bark, pith and xylem annual rings and to measure their property parameters on circular sections of tree trunks.
set-calibration
A tool allowing to modify the calibration (physical units) of images
napari-bigfish
A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images.
segment-embryo
3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
napari-J
A plugin to exchange data with FIJI and to use FIJI image analysis from napari
