8 projects
set-calibration
A tool allowing to modify the calibration (physical units) of images
auto-options-python
Manage command options in Python and create QWidgets for them.
filament-toolbox
A number of tools useful for segmenting and analyzing filaments.
tree-ring-analyzer
A package that allows to segment tree rings.
napari-tree-rings
A tool to delineate bark, pith and xylem annual rings and to measure their property parameters on circular sections of tree trunks.
napari-bigfish
A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images.
segment-embryo
3D Segment ascidian embryos using cellpose. The images are first rescaled to be isotropic and then downscaled, before cellpose is used. The resulting labels are upscaled to match the original data.
napari-J
A plugin to exchange data with FIJI and to use FIJI image analysis from napari
