A webscraper to automate retrieving data from CAZy, build a local CAZyme SQL database, and throughly interrogating the data. Also, automate retrieving protein data, sequences, EC numbers and structure files for specific datasets in the CAZyme database from UniProt, GenBank and PDB.
A package of utility and miscellaneous functions for using in bioinformaticspipelines, primarily in Python.
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
ncfp is a script and module that facilitates recovery of nucleotide sequences from NCBI encoding a specified set of input protein sequences
lpbio provides scripts and modules for computational biology
pyADHoRe provides a data structure for import and manipulation of i-ADHoRe output.