Skip to main content

lpbio provides scripts and modules for computational biology

Project description


Scripts, tools and modules for computational biology


When installed, the lpbio package provides the following scripts, available at the command-line:


The lpbio package provides the following modules for use in Python applications and scripts

  • pysge: a module that writes job files compatible with SGE-like schedulers, and runs them.
  • swarm: a module for interacting with the Swarm clustering tool and its output.

Development notes

Create a local environment, e.g. in conda, and install with pip install -e .:

$ conda create --name lpbio
$ source activate lpbio
$ pip install -e .


Tests are intended to be run with pytest from the repository root (using coverage and pytest-cov):

$ pwd
$ pytest --cov

Project details

Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

lpbio-0.1.0a0.tar.gz (12.8 kB view hashes)

Uploaded Source

Built Distribution

lpbio-0.1.0a0-py3-none-any.whl (18.9 kB view hashes)

Uploaded Python 3

Supported by

AWS AWS Cloud computing and Security Sponsor Datadog Datadog Monitoring Fastly Fastly CDN Google Google Download Analytics Microsoft Microsoft PSF Sponsor Pingdom Pingdom Monitoring Sentry Sentry Error logging StatusPage StatusPage Status page