25 projects
snippy-nextgen
The Next Generation of Microbial Variant Calling with Snippy
episodic
A complete pipeline for fitting and testing Fixed Local Clock (FLC) molecular clock models for episodic evolution.
beastiary
Real time and remote MCMC trace monitoring with BEASTIARY
jupyterlab-cpg-portal
Access file in CPG Portal
Barbet
Bacteria and Archaea Representation using Bidirectional Embeddings for Taxonomic classification
glasscandle
None
write-the
AI-powered Code Generation and Refactoring Tool
beast-skygrid
None
pybeast
None
langevitour
Python interface to langevintour
snk-cli
None
snk
None
guigaga
None
pango-collapse
Collapse Pango sublineages up to user defined parent lineages.
with-cloudflared
Context manger for Cloudflared
env-exec
Programmatically execute commands in environments.
phytest
Quality control for phylogenetic pipelines using pytest
stem-rate
None
litchat
None
pipeline-name
None
mccoy
fasteve
A simple and feature complete REST API framework designed for speed
dynamic-beast
online-beast
pyoinformatics
A simple bioinformatics package
