Installation
Install using pip:
pip install git+https://github.com/houndry/barbet.gitUsage
See the options for making inferences with the command:
barbet --helpRun
barbet --input GCA_000006945.2.fna --output-dir outputsOr using the large model:
barbet --input GCA_000006945.2.fna --output-dir outputs-large --largeTraining
You can train the model on releases from GTDB or your own custom dataset. See the instructions in the documentation for preprocessing and training.
Credits
Robert Turnbull, Mar Quiroga, Gabriele Marini, Torsten Seemann, Wytamma Wirth
For more information contact: <wytamma.wirth@unimelb.edu.au>
Created using torchapp (https://github.com/rbturnbull/torchapp).
1 maintainer
Metadata
1 maintainer
Release files for Barbet 0.1.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| barbet-0.1.1.tar.gz | 26.4 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| barbet-0.1.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 56.0 kB
Release files / barbet-0.1.1.tar.gz
| Download URL | barbet-0.1.1.tar.gz |
|---|---|
| Size | 26.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
d7b1e2a5596e9427d10c0b4b2095146a76ff2bba4ca24c6862330227ca9c8480
|
|
BLAKE2b-256 checksum How to use checksums |
d0430eacfc42530598b38f1bf09be62b58ca0d82279e3394721be298e17fee52
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
python-httpx/0.27.0
|
Release files / barbet-0.1.1-py3-none-any.whl
| Download URL | barbet-0.1.1-py3-none-any.whl |
|---|---|
| Size | 29.6 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
966ae0e53d8561fdbc48e17f605a25590cbbec1ea7506d8277387490e86a6386
|
|
BLAKE2b-256 checksum How to use checksums |
735e70a6172ef2ca1ddf29a5cbf34f8d61d0001dad8b2ffa115fe57839c20e47
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
python-httpx/0.27.0
|
Security for Barbet 0.1.1
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
No provenance found
None of the files in this release were uploaded with provenance metadata.
A note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
To learn more about protecting yourself from malicious actors, visit our package security documentation.
