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xguse

7 Projects

blacktie

Last released on Jul 17, 2013

A python wrapper for analysis of RNA-seq data with the popular tophat/cufflinks pipeline.

coordinator-data-tasks

Last released on Oct 25, 2017

A python-based command line utility to automate some of the most common data tasks faced by the Clinical Coordinators.

easygv

Last released on Sep 7, 2017

Define nodes and edges in an excel file and graph-style attributes in a yaml file with inheritence.

extract_genome_region

Last released on May 24, 2016

Given a CSV file of variable information defining the regions of interest, return a file that contains a fasta-formatted representation of these regions.

gfunc

Last released on Jul 25, 2013

[coming soon] gFunc: functional genomics using graphs for integration of many Omics data types

snaketools

Last released on Oct 10, 2017

Small library of helper tools for setting up, graphing, and working with Snakemake rules.

table-enforcer

Last released on Nov 17, 2017

ORM-like package for defining, loading, and validating table schemas in pandas.

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