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7 Projects


Last released on Feb 15, 2018

ORM-like package for defining, loading, and validating table schemas in pandas.


Last released on Dec 18, 2017

Small library of helper tools for setting up, graphing, and working with Snakemake rules.


Last released on Oct 25, 2017

A python-based command line utility to automate some of the most common data tasks faced by the Clinical Coordinators.


Last released on Sep 7, 2017

Define nodes and edges in an excel file and graph-style attributes in a yaml file with inheritence.


Last released on May 24, 2016

Given a CSV file of variable information defining the regions of interest, return a file that contains a fasta-formatted representation of these regions.


Last released on Jul 25, 2013

[coming soon] gFunc: functional genomics using graphs for integration of many Omics data types


Last released on Jul 17, 2013

A python wrapper for analysis of RNA-seq data with the popular tophat/cufflinks pipeline.

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