13 projects
spatio-flux
A demonstration of process composition rebuilding and extending COMETS by composing functional components
process-bigraph
protocol and execution for compositional systems biology
bigraph-viz
A visualization method for displaying the structure of process bigraphs
bigraph-schema
A serializable type schema for compositional systems biology
stochastic-arrow
None
rest-process
server for hosting processes and composites from process-bigraph
vivarium-core
Engine for composing and simulating computational biology models with the Vivarium interface.
bigraphs
a python interface to Robin Milner's bigraph formalism
vivarium-cell
A collection of models for simulating cells with Vivarium.
