96 projects
scitex-todo
Canonical YAML task store with pluggable adapters (mermaid dependency graphs)
scitex-msword
MS Word (.docx) reader/writer with journal-style profiles (MDPI, IEEE, Springer, Elsevier, RESNA, IOP) — standalone module from the SciTeX ecosystem
scitex
A comprehensive Python library for scientific computing and data analysis
figrecipe
Reproducible matplotlib wrapper with mm-precision layouts
scitex-dev
Shared developer utilities for the SciTeX ecosystem
scitex-writer
LaTeX manuscript compilation system for scientific documents with MCP server
scitex-io
Universal scientific data I/O with plugin registry
scitex-clew
Verifiable knowledge graph for scientific experiments
scitex-agent-container
Declarative YAML-based framework for defining, managing, and orchestrating AI coding agent instances
scitex-hub
SciTeX Hub - Deployment and management CLI for SciTeX
scitex-orochi
Agent Communication Hub for the SciTeX ecosystem
scitex-etc
Small cross-cutting utilities: interactive keyboard input (wait_key, count), parameter-grid iteration (count_grids, yield_grids), regex string search (search), and media handling (detect/classify/show)
scitex-session
@session decorator + lifecycle (auto-CLI, output dir tree, RandomStateManager) — standalone module from the SciTeX ecosystem
scitex-notification
Multi-backend notification system for SciTeX
scitex-stats
Publication-ready statistical testing framework with 23 tests, effect sizes, power analysis, and MCP server
scitex-linalg
Small linear-algebra helpers (distance, geometric median, cosine, nannorm) — standalone module from the SciTeX ecosystem
scitex-config
Configuration + path management with direct → yaml → env → default priority cascade and per-package state-dir resolver — standalone module from the SciTeX ecosystem
scitex-gen
General utilities (caching, env detection, normalization, mat→npy, xml→dict, TimeStamper, …) — standalone module from the SciTeX ecosystem
scitex-dsp
Digital signal processing (PAC, Hilbert, Wavelet, filters, demo signals, …) — standalone module from the SciTeX ecosystem
scitex-nn
Neural network building blocks (BNet, Hilbert, PAC, Wavelet, Filters, …) — standalone module from the SciTeX ecosystem
socialia
Unified social media management - posting, analytics, and insights
crossref-local
Local CrossRef database with 167M+ works and full-text search
scitex-ui
Shared frontend UI components for the SciTeX ecosystem
scitex-scholar
Scientific paper search, enrichment, download, and management for the SciTeX ecosystem
scitex-ml
SciTeX ML — machine learning, classification, training utilities
scitex-dataset
Multi-domain scientific dataset fetcher — neuroscience, biology, pharmacology, medical (OpenNeuro, DANDI, PhysioNet, GEO, ChEMBL, ClinicalTrials.gov)
scitex-container
Unified container management for Apptainer and Docker
scitex-str
Text processing utilities for scientific workflows — LaTeX formatting, colored output, string parsing, and plot text helpers
openalex-local
Local OpenAlex database with 284M+ works, abstracts, and semantic search
scitex-browser
Browser automation for scholarly paper access in the SciTeX ecosystem
scitex-app
SciTeX App SDK — write-once interface for local + cloud apps
scitex-events
General-purpose async event bus (file-backed, JSON Lines) — standalone module from the SciTeX ecosystem
scitex-benchmark
Performance benchmarking, runtime monitoring, and profiling helpers — standalone module from the SciTeX ecosystem
scitex-db
Database utilities for scientific computing with SQLite3 and PostgreSQL
scitex-capture
Session-based screen capture (single screenshots, multi-frame GIFs, grid overlays, monitor info) — standalone module from the SciTeX ecosystem
scitex-decorators
Decorator library: numpy_fn/torch_fn/pandas_fn/xarray_fn/signal_fn type converters, caching, batching, deprecation — standalone module from the SciTeX ecosystem
scitex-cv
Small cv2/Pillow image-processing utilities (load/save, resize/rotate/crop, blur/sharpen/edge, drawing) — standalone module from the SciTeX ecosystem
scitex-os
Host check + safe file mv — standalone module from the SciTeX ecosystem
scitex-audio
Text-to-Speech with multiple backends for scientific workflows
scitex-pd
Pandas helpers (force_df, melt_cols, find_pval, mv, slice, sort, round, …) — standalone module from the SciTeX ecosystem
scitex-seizure-metrics
Standardised evaluation metrics for epileptic seizure detection and forecasting.
scitex-plt
SciTeX plotting module (alias for figrecipe)
scitex-dict
Dictionary utilities (DotDict, safe_merge) for the SciTeX ecosystem
scitex-ssh
SSH primitives for SciTeX (exec/copy/attach/tunnel; per-host allowlist)
newb
A fresh AI agent tries to use your package — pytest-style. If it succeeds, your docs work.
scitex-web
Web scraping (URLs, images), PubMed search, URL summarization helpers — standalone module from the SciTeX ecosystem
scitex-resource
System resource info, processor usage logging, RAM limit — standalone module from the SciTeX ecosystem
scitex-sh
Safe subprocess wrapper (list-only, no shell injection) with stream/timeout support — standalone module from the SciTeX ecosystem
scitex-tex
LaTeX helpers — export to .tex, render preview images, vector formatting — standalone module from the SciTeX ecosystem
scitex-security
GitHub security alerts checker (Dependabot, secret scanning, code scanning) — standalone module from the SciTeX ecosystem
scitex-context
Execution-context detection (script vs Jupyter vs IPython) + stdout/stderr suppression — standalone module from the SciTeX ecosystem
scitex-git
Git + GitHub Actions utilities (clone, branch, commit, retry, remote helpers, gh secrets/variables with SHA256 sidecar) — standalone module from the SciTeX ecosystem
scitex-introspect
IPython-style introspection (signatures, docstrings, members, source, call graphs, class hierarchy) for any Python package — standalone module from the SciTeX ecosystem
scitex-gists
SigmaPlot macro conversion utilities for matplotlib
scitex-compat
Backward compatibility shims and deprecation wrappers
scitex-audit
Unified security scanning by orchestrating bandit, shellcheck, pip-audit, and GitHub alerts
scitex-logging
Logging utilities for the SciTeX ecosystem
scitex-types
Scientific type definitions (ArrayLike, ColorLike) and validation
scitex-template
Project template cloner + code snippet library for the SciTeX ecosystem — six templates vendored, shallow-cloned on demand to ~/.scitex/template/cache/
scitex-repro
Reproducibility utilities (random state, timestamps, hashing)
scitex-path
Scientific project path utilities (find, split, symlink, versioning)
scitex-parallel
Thread/process pool parallel execution utilities
scitex-datetime
Datetime helpers (linspace, normalize_timestamp, format helpers) — standalone module from the SciTeX ecosystem
scitex-hpc
Generic SLURM dispatch (srun, sbatch, sync, poll, fetch) for the SciTeX ecosystem — login nodes never run compute
scitex-cloud
SciTeX Cloud - Deployment and management CLI for SciTeX
scitex-genai
SciTeX GenAI — modality-organised generative-AI provider abstraction (LLM, agents, image/audio/video stubs)
agentic-test
Alias for newb — agentic testing for Python packages.
newbie-test
Alias for newb — agentic testing for Python packages.
scitex-core
Core infrastructure and fundamental utilities for the SciTeX ecosystem
scitex-bridge
Cross-module adapters: scitex.stats ↔ matplotlib annotations, scitex.stats ↔ vis FigureModel, scitex.plt ↔ vis — standalone module from the SciTeX ecosystem
scitex-notebook
Jupyter notebook verification, compilation, and DAG-based conversion for the SciTeX ecosystem
scitex-linter
AST-based linter enforcing SciTeX reproducible research patterns
claude-code-telegrammer
Custom Telegram MCP server + TUI auto-responder for running Claude Code as an autonomous Telegram agent
scitex-tunnel
Persistent SSH reverse tunnel for SciTeX (NAT traversal)
scitex-skills
Auto-generated AI agent skill pages for the SciTeX ecosystem
vib
AI agents vibrate/call you when they need input or finish a task
sciwriter
LaTeX manuscript compilation system for scientific documents
plotspec
Record and reproduce matplotlib figures
fsb
Figure-Statistics Bundle: A specification for reproducible scientific figures
cammy
AI's camera - Multi-desktop screenshot capture with MCP server for AI agents
screen-manager
Screen session manager with MCP support
cipdb
Conditional iPDB - Simple conditional debugging for Python
priority-config
Universal config resolver with precedence: direct → config → env → default
pip-project-template
A Python project template for a pip package with MCP server support and agentic coding workflows (planning + test-driven development)
sccpt
Lightweight screen capture library optimized for WSL and Windows
gpu-pac
GPU-Accelerated Phase-Amplitude Coupling calculation using PyTorch
torch-pac
GPU-Accelerated Phase-Amplitude Coupling calculation using PyTorch
mngs
For lazy python users (monogusa people in Japanse), especially in ML/DSP fields
llemacs-python
Python Utilities for LLEmacs
mdjson
Convert between Markdown and simplified JSON format
ezdsp
Easy digital signal processing
numpy-fn
A decorator for seamless numpy calculations from torch.tensor and pd.DataFrame.
torch-fn
A decorator for seamless PyTorch calculations (primarily on CUDA) from numpy.ndarray and pd.DataFrame.
eeg-dementia-classification-MNet
Pretrained MNet model for classifying demetia subclasses (HV, AD, DLB, and iNPH)
vChatGPT
Verbal ChatGPT
ripple-detector-CNN
Hippocampal ripple detector introduced in the paper 'Towards threshold invariance in defining hippocampal ripples'
