22 projects
rapids-singlecell
running single cell analysis on Nvidia GPUs
scirpy
Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis
mudata
Multimodal data
spatialdata-plot
Static plotting for spatial data.
pydeseq2
A python implementation of DESeq2.
squidpy
Spatial Single Cell Analysis in Python
genomic-features
Genomic annotations using BioConductor resources in Python.
decoupler
Python package to perform enrichment analysis from omics data.
pertpy
Perturbation Analysis in the scverse ecosystem.
napari-spatialdata
Interactive visualization of spatial omics data with napari
spatialdata
Spatial data format.
pandas-uuid
Pandas ExtensionArray / ExtensionDType for UUIDs.
anndata
Annotated data.
scanpy
Single-Cell Analysis in Python.
session-info2
Print versions of imported packages.
muon
Multimodal omics analysis framework
pytometry
Flow & mass cytometry analytics in scverse
spatialdata-io
SpatialData IO for common techs
infercnvpy
Infercnv is a scalable python library to infer copy number variation (CNV) events from single cell transcriptomics data. It is heavliy inspired by InferCNV, but plays nicely with scanpy and is much more scalable.
fast-array-utils
Fast array utilities with minimal dependencies.
deres
Container and visualization functions for differential expression (and similar) result tables.
formulaic-contrasts
Build contrasts for models defined with formulaic
