Squidpy - Spatial Single Cell Analysis in Python
Project description
Squidpy - Spatial Single Cell Analysis in Python
Squidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top of scanpy and anndata, from which it inherits modularity and scalability. It provides analysis tools that leverages the spatial coordinates of the data, as well as tissue images if available.
Visit our documentation for installation, tutorials, examples and more.
Manuscript
Please see our preprint on bioRxiv to learn more.
Squidpy’s key applications
Installation
Install Squidpy via PyPI by running:
pip install squidpy # or with napari included pip install 'squidpy[interactive]'
Contributing to Squidpy
We are happy about any contributions! Before you start, check out our contributing guide.
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| Filename, size | File type | Python version | Upload date | Hashes |
|---|---|---|---|---|
| Filename, size squidpy-1.1.2-py3-none-any.whl (150.0 kB) | File type Wheel | Python version py3 | Upload date | Hashes View |
| Filename, size squidpy-1.1.2.tar.gz (133.3 kB) | File type Source | Python version None | Upload date | Hashes View |