26 projects
session-info2
Print versions of imported packages.
anndata
Annotated data.
scirpy
Python library for single-cell adaptive immune receptor repertoire (AIRR) analysis
scanpy
Single-Cell Analysis in Python.
formulaic-contrasts
Build contrasts for models defined with formulaic
pertpy
Perturbation Analysis in the scverse ecosystem.
rapids-singlecell-cu13
running single cell analysis on Nvidia GPUs
rapids-singlecell-cu12
running single cell analysis on Nvidia GPUs
infercnvpy
Infercnv is a scalable python library to infer copy number variation (CNV) events from single cell transcriptomics data. It is heavliy inspired by InferCNV, but plays nicely with scanpy and is much more scalable.
scvi-tools
Deep probabilistic analysis of single-cell omics data.
pydeseq2
A python implementation of DESeq2.
pandas-uuid
Pandas ExtensionArray / ExtensionDType for UUIDs.
spatialdata-plot
Static plotting for spatial data.
mudata
Multimodal data
muon
Multimodal omics analysis framework
spatialdata-io
SpatialData IO for common techs
spatialdata
Spatial data format.
napari-spatialdata
Interactive visualization of spatial omics data with napari
squidpy
Spatial Single Cell Analysis in Python
pytometry
Flow & mass cytometry analytics in scverse
decoupler
Python package to perform enrichment analysis from omics data.
cellrank
CellRank: dynamics from multi-view single-cell data
rapids-singlecell
running single cell analysis on Nvidia GPUs
genomic-features
Genomic annotations using BioConductor resources in Python.
fast-array-utils
Fast array utilities with minimal dependencies.
deres
Container and visualization functions for differential expression (and similar) result tables.
