ArraySplitter 1.1.6

De Novo Decomposition of Satellite DNA Arrays into Monomers within Telomere-to-Telomere Assemblies

ArraySplitter: De Novo Decomposition of Satellite DNA Arrays

Decomposes satellite DNA arrays into monomers within telomere-to-telomere (T2T) assemblies. Ideal for analyzing centromeric and pericentromeric regions on monomeric level.

Status: In development. Optimized for 100Kb scale arrays; longer arrays will work but may take longer to process. Signigicanlty longer time.

Installation

Prerequisites

• Python 3.6 or later

Installation with pip:

pip install arraysplitter

Usage

Basic Example

time arraysplitter --input chr1.arrays.fa --output chr1.arrays

Explanation

• --input chr1.arrays.fa: FASTA file of satDNA arrays.
• --output chr1.arrays: Output FASTA containing decomposed monomers (separated by spaces).

All Options

arraysplitter --help 

Contact

For questions or support: [e-mail]