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Python extension of CNVnator

Project description

CNVpytor Logo

CNVpytor - a python extension of CNVnator

CNVpytor is a Python package and command line tool for CNV analysis from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.

CNVpytor project is in early development stage.

Source:: https://github.com/abyzovlab/CNVpytor

Bug reports:: https://github.com/abyzovlab/CNVpytor/issues

API documentation: https://abyzovlab.github.io/CNVpytor/

Dependencies

  • gnureadline
  • requests
  • pysam
  • numpy
  • scipy
  • matplotlib
  • h5py >= 2.9

Optional:

  • ROOT - for CNVnator root import/export functionality
  • seaborn - for additional plotting styles

Install

> pip install cnvpytor
> cnvpytor -download

Using

Check CNVpytor github page.

License

Released under MIT licence.

Project details


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Files for CNVpytor, version 1.0a4
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