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Python extension of CNVnator

Project description

CNVpytor Logo

CNVpytor - a python extension of CNVnator

CNVpytor is a Python package and command line tool for CNV analysis from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.

CNVpytor project is in early development stage.


Bug reports::

API documentation:


  • gnureadline
  • requests
  • pysam
  • numpy
  • scipy
  • matplotlib
  • h5py >= 2.9


  • ROOT - for CNVnator root import/export functionality
  • seaborn - for additional plotting styles


> pip install cnvpytor
> cnvpytor -download


Check CNVpytor github page.


Released under MIT licence.

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