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Image analysis for microbial cultures growing on solid agar surfaces

Project description

Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar. This module contains a set of functions for spot location, image segmentation and spot size estimation, suitable for quantifying culture size/cell density for libraries of microbial cultures growing on a solid agar surface.

Detailed documentation can be found at the websites below:

Website describing current, stable release.

GitHub pages descring latest, development version.

Open access manuscript describing Colonyzer algorithms.

Open access video and manuscript demonstrating the use of Colonyzer within a Quantitative Fitness Analysis workflow.

Project details


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Filename, size & hash SHA256 hash help File type Python version Upload date
Colonyzer2-1.1.22.tar.gz (1.2 MB) Copy SHA256 hash SHA256 Source None Aug 14, 2017

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