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Image analysis for microbial cultures growing on solid agar surfaces

Project Description

Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar. This module contains a set of functions for spot location, image segmentation and spot size estimation, suitable for quantifying culture size/cell density for libraries of microbial cultures growing on a solid agar surface.

Detailed documentation can be found at the websites below:

Website describing current, stable release.

GitHub pages descring latest, development version.

Open access manuscript describing Colonyzer algorithms.

Open access video and manuscript demonstrating the use of Colonyzer within a Quantitative Fitness Analysis workflow.

Release History

Release History

This version
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1.1.22

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1.1.20

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1.1.19

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1.1.18

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1.1.17

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1.1.16

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1.1.15

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1.1.13

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1.1.11

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1.1.9

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1.1.8

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1.1.7

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1.1.6

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1.1.5

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1.1.4

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1.1.3

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1.1.2

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1.1.1

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1.1.0

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1.0.88

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1.0.87

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1.0.86

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1.0.85

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1.0.84

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1.0.83

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1.0.82

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1.0.81

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1.0.80

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1.0.79

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1.0.78

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1.0.77

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1.0.76

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1.0.75

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1.0.74

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1.0.73

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1.0.72

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1.0.71

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1.0.70

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1.0.69

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1.0.68

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1.0.67

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1.0.66

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1.0.65

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1.0.64

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1.0.63

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1.0.61

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1.0.56

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1.0.54

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1.0.52

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1.0.51

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1.0.50

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1.0.45

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1.0.43

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1.0.42

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1.0.4

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1.0.3

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1.0.2

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1.0.1

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1.0

Download Files

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File Name & Checksum SHA256 Checksum Help Version File Type Upload Date
Colonyzer2-1.1.22.tar.gz (1.2 MB) Copy SHA256 Checksum SHA256 Source Aug 14, 2017

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