Image analysis for microbial cultures growing on solid agar surfaces
Image analysis software for estimating cell density in arrayed microbial cultures growing on solid agar. This module contains a set of functions for spot location, image segmentation and spot size estimation, suitable for quantifying culture size/cell density for libraries of microbial cultures growing on a solid agar surface.
Detailed documentation can be found at the websites below:
Website describing current, stable release.
GitHub pages descring latest, development version.
Open access manuscript describing Colonyzer algorithms.
Open access video and manuscript demonstrating the use of Colonyzer within a Quantitative Fitness Analysis workflow.