DESeq2 runner (Python + rpy2) for bulk RNA-seq with auto-discovery, end-to-end DE, plots, and HTML report.
Project description
GeneXpressor
A friendly DESeq2 runner driven from Python via rpy2. It auto-discovers your counts/metadata, produces plots, CSVs, and an optional HTML report.
Requirements
- R (≥ 4.x) installed and on PATH (on Windows set
R_HOMEor install R normally) - R packages:
DESeq2,BiocParallel,dplyr,ggplot2,ggrepel,pheatmap,readr,tidyr,tibble,rmarkdown,RColorBrewer- (optional)
readxl,arrowfor Excel/feather/parquet
- (optional)
- Python:
rpy2
Install (editable)
pip install -e .
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Source Distribution
genexpressor-0.1.1.tar.gz
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