Pan-ChIP-seq Analysis of Peak Sets
Project description
HiCShuffle
FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis
Installation
pip install hicshuffle
Usage
hicshuffle [options]
Commands:
diff FASTQ Shuffling Tool For Sanity Check in Hi-C Differential Contact Analysis
Run panchip <command> -h for help on a specific command.
PanChIP: Pan-ChIP-seq Analysis of Peak Sets
positional arguments:
command Subcommand to run
optional arguments:
-h, --help show this help message and exit
--version show program's version number and exit
panchip diff [-h] [-t THREADS] [-r REPEATS] library_directory input_directory output_directory
Analysis of a list peat sets
positional arguments:
library_directory Directory wherein PanChIP library was stored.
input_directory Input directory wherein peak sets in the format of .bed
files are located.
(.bed6 format with numeric scores in 5th column required)
output_directory Output directory wherein output files will be stored.
optional arguments:
-h, --help show this help message and exit
-t THREADS Number of threads to use. (default: 1)
-r REPEATS Number of repeats to perform. (default: 1)
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HiCShuffle-1.0.0.tar.gz
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