Skip to main content

Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays.

Project description

Build Status Coverage Status PyPI version

MEArec: Fast and customizable simulation of extracellular recordings on Multi-Electrode-Arrays

MEArec is a package for generating biophysical extracellular neural recording on Multi-Electrode Arrays (MEA). The recording generations combines a Extracellular Action Potentials (EAP) templates generation and spike trains generation. The recordings are built by convoluting and modulating EAP templates with spike trains and adding noise.

To clone this repo open your terminal and run:

git clone https://github.com/alejoe91/MEArec.git

Installation

The MEArec package can be installed with:

pip install MEArec

or, from the cloned folder:

python setup.py develop

Documentation

The MEArec detailed documentation is here: https://mearec.readthedocs.io/en/latest/

Reference

For further information please refer to the open-access Neuroinformatics article: https://doi.org/10.1007/s12021-020-09467-7

If you use the software, please cite:

@article{buccino2020mearec,
  title={Mearec: a fast and customizable testbench simulator for ground-truth extracellular spiking activity},
  author={Buccino, Alessio Paolo and Einevoll, Gaute Tomas},
  journal={Neuroinformatics},
  pages={1--20},
  year={2020},
  publisher={Springer}
}

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for MEArec, version 1.4.4
Filename, size File type Python version Upload date Hashes
Filename, size MEArec-1.4.4.tar.gz (3.2 MB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page